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awesome

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-r

A curated list of awesome R packages, frameworks and software.

bam-readcount

count DNA sequence reads in BAM files

bio_scripts

Practical, reusable scripts for bioinformatics

biom-format

The Biological Observation Matrix (BIOM) Format Project

biopython

Official git repository for Biopython (converted from CVS)

blasr

BLASR: The PacBio® long read aligner

centrifuge

Classifier for metagenomic sequences

chinese-poetry

The most comprehensive database of Chinese poetry 🧶最全中华古诗词数据库, 唐宋两朝近一万四千古诗人, 接近5.5万首唐诗加26万宋诗. 两宋时期1564位词人，21050首词。

cnvkit

Copy number variant detection from targeted DNA sequencing

cpipe

The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline

cutadapt

cutadapt removes adapter sequences from sequencing reads

dna-methylation-analysis

my notes on DNA methylation analysis (arrays and sequencing data)

dna-seq-analysis

my notes on whole exome and whole genome sequencing analysis

easyfuse

EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.

factoextra

Extract and Visualize the Results of Multivariate Data Analyses

free-programming-books

:books: Freely available programming books

ggsignif

Easily add significance brackets to your ggplots

gofaidx

gtz

A high performance and compression ratio compressor, powered by GTXLab of Genetalks.

helper-code-for-uparse

hla-hed

A python script to calculate the HLA Evolutionary Divergence (HED) Score.

long-rna-seq-pipeline

STAR based ENCODE Long RNA-Seq processing pipeline

manhattanly

multi-metagenome

ngmlr

Ngmlr is a long-read mapper designed to align PacBilo or Oxford Nanopore to a reference genome with a focus on reads that span structural variations

pyfaidx

Efficient pythonic random access to fasta subsequences

python

python_collect