sunqiangzai Goto Github PK

30daychartchallenge

My chart for the 30DayChartChallenge

361division

361 Division - Scientific Training, Education and Learning

advanced-shiny

Shiny tips & tricks for improving your apps and solving common problems

aeg_proteomics

aeqtl

alphafold_non_docker

AlphaFold2 non-docker setup

annotationliftover

A pipeline to liftover the gene structure of reference genome to other lines/accessions

antibiotic-treatment-failure

code for Stracy et al, Science 2022

aracne-ap

Network Reverse Engineering through AP inference of Mutual Information

aria2gui

Aria2GUI for macOS

asja

ASJA: a program for Assembling Splice Junctions Analysis

assemblybasedhaplotyperesolution

Haplotype resolve epigenetic and transcriptomic data types

awesome-bioinformatics

A curated list of awesome Bioinformatics databases, softwares, libraries, toolboxes, pipelines, books, courses, tutorials and more.

beautiful-visualization-with-r

《R语言数据可视化之美》配套代码

bookmarks

books

无它术，唯勤读书而多为之，自工

cancer-risk-prediction

Prediction of Cancer Risk using The Cancer Genome Atlas (TCGA) methylation data-sets

cancerapa

Cancer susceptible genes revealed by transcriptome-wide association study

carsten_cytof_code

cdcscreen

Source code for the computational analysis of functional circular RNAs screening using the CRISPR-Cas13 system

cfrna-seq-pipeline-ngo-manuscript-2019

This pipeline contains the data processing steps used for Thuy Ngo's 2019 cell-free RNA manuscript

cgrs

We established a new prognostic signature, clinic and genetic risk score (CGRS), by integrating gene expression profiles with clinical characteristics. CGRS has been confirmed in four different cohorts for accurately predicting GC prognosis, and significantly stratified stage III GC patients into high and low risk groups with different survival time. Furthermore, an easy-to-use nomogram and web application based on CGRS were developed to facilitate its application in clinical practice.

chinese-pangenome-consortium-phase-i

chip-mutation-calling-ngs-pipeline

This pipeline based on snakemake calls CHIP variants from next-generation whole-exome/genome sequencing of human samples and produces a purely filtered VCF file containing high confident CHIP mutations.

chip-seq-analysis

ChIP-seq analysis notes from Tommy Tang

chromodethripsis

Haplotype resolution of chromothriptic and rearranged chromosomes

chromothripsispaperfigures

Scripts to produce custom figures for the chromothripsis paper

cibersort

circexplorer

A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)

circos-data-visualization-how-to-code

Code examples used in "Circos Data Visualization How-To"