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Susheel Bhanu Busi's Projects

16s_dada2 icon 16s_dada2

Analysis of 16S sequencing data via `DADA2` using a `snakemake` workflow

bcbb icon bcbb

Incubator for useful bioinformatics code, primarily in Python and R

flashweave.jl icon flashweave.jl

Inference of microbial interaction networks from large-scale heterogeneous abundance data

genescf icon genescf

Gene Set Clustering based on Functional annotation

grodon icon grodon

Snakefile and scripts for running gRodon

hmm_updater icon hmm_updater

Automated HMM creation with Uniprot sequences using Rhea or EC as clustering IDs

imp_docs icon imp_docs

Folder containing config file and launcher scripts for IMP

marmic_2017 icon marmic_2017

Course materials for NGS genomic & metagenomic course (Feb 2017)

metabolic icon metabolic

A scalable high-throughput metabolic and biogeochemical functional trait profiler

mice_multiomics_mmrrc icon mice_multiomics_mmrrc

metaG_metaT analyses for two gut microbiota profiles established by Ericsson et al. at the Mutant Mouse Resource and Research Center at the University of Missouri-Columbia (USA)

multi-metagenome icon multi-metagenome

Scripts and tutorials on how to assemble individual microbial genomes from metagenomes

qiime2_picrust_batch icon qiime2_picrust_batch

Batch script for running Qiime2 all the way through to making a file for PICRUSt. Additional files for PICRUSt will be added later

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