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adventofcode.2018

bids-app-helper-functions

collection of python code for converting a python script into a BIDS app

bids-events-tsv

Additional documentation and examples for how to create events.tsv and events.json file for fMRI tasks that cannot be parameterized by response time.

bidzort

Sorting a BIDS data directory

brainhackwestern.github.io

confounder

BIDS app for calculating goodness-of-fit for GLM models with noise confounds

confounder-snakemake

BIDS app to facilitate determining which set of experimental confounds to include in a standard task-based fMRI GLM analysis.

cuddly-octo-parakeet

denoise-fmri

Snakemake BIDS app for denoising fmriprep, uses the snakebids package for running snakemake workflow as bids app

diffparc-smk

General-purpose Snakemake workflow for diffusion-based subcortical parcellation

favoritethings-teaching

Repository for testing skills learned in git-teaching

fmri-software-teaching

Repository with teaching materials for running a single fMRI dataset through SPM12, FSL, and AFNI.

fmriprep-teaching

Repository to hold teaching materials for fMRIPrep

freesurfer-bids

Snakemake BIDS app for FS 7.1 recon-all, uses the snakebids package for running snakemake workflow as bids app

giraffe.tools-examples

git-teaching

teaching materials for intro to git basics

github-personal-website

Code that'll help you kickstart a personal website that showcases your work as a software developer.

hcp-utils

Utilities to use HCP and HCP-like data with nilearn and other Python tools

itsasmallmagneticworld

ISMRM Degrees of Separation. Example for Educational 2021

labelmerge

Merge label maps

mb

Support for CMRR multi-band pulse sequences

meta-analysis-teaching

Teaching materials for meta-analyses for neuroimaging data

my-teaching-repository

neuroglia-helpers

Helper and wrapper scripts for using Singularity locally and on compute canada

nimare

Coordinate- and image-based meta-analysis in Python

pcm_toolbox

Pattern Component Modelling toolbox for multivariate analysis

postproc-smk

WIP - Simple Post-BIDS processing pipeline with snakemake

ppmi-bids-smk

Snakemake workflow for downloading/converting PPMI data

reimagined-octo-barnacle

sequana

Sequana: a set of Snakemake NGS pipelines