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aki_cdm

External Validation for AKI Predictive Models using PCORnet CDM data

aki_multiview

this repo tracks the development of multiview feature selection for AKI project

awesome-nlp

:book: A curated list of resources dedicated to Natural Language Processing (NLP)

bc_qa

GPC Breast Cancer Cohort Characterization; formerly https://bitbucket.org/gpcnetwork/bc_qa/

bioinformatics-research-lectures

lecture material for biomedical informatics driven research class

clinical_action_kd

knowledge discovery for clinical actions involved in sepsis detection and treatment

covid-sofa-sllm-mllm

Constructing Interpretable and Informative ML-based Severity Scoring system for COVID-19 risk stratification

data_analytics_pipline

multiple projects that used to develop and demo data analytic pipeline

disclosure_risk_analysis

Include 6 models for evaluating data re-identification risk (inspired by sdcMicro)

dkd_fs_archived

Feature Selection Framework for DKD predictions

dkd_pm_temporal

temporal EHR modeling for DKD prediction

dqe-c

DQe-c is a tool for examining completeness in clinical research data repositories.

eefs

fhir

FHIR Protocol Buffers

folder-structure-conventions

Folder / directory structure options and naming conventions for software projects

grouse

Greater Plains Collaborative Reusable Unified Study Environment (GROUSE)

grpreg

:exclamation: This is a read-only mirror of the CRAN R package repository. grpreg — Regularization Paths for Regression Models with Grouped Covariates Report bugs for this package: http://github.com/pbreheny/grpreg/issues

hmi7001-secondary-use-of-ehr

This repo is for sharing codes for HMI7001 class on secondary use of EHR

i2b2-geo

keser

https://celehs.github.io/KESER/

liquid-s4

Liquid Structural State-Space Models

phase2.1akirpackage

phase2.1datarpackage

phecdm

collection of concept sets and computational formula for commonly used condition phenotypes

public_microdata

explore useful public microdata

pubmed-literature-mining

text mining on pubmed literature downloads

r_web_scraping

initial try on web-scraping in r

redcap-param-datadict

sankey_viz

this folder is for saving interactive sankey diagram

simulations

multiple simulation pipelines