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2022-lish-harvard-datasciencecompetition

Lab for Innovation Science at Harvard data science competition. My solution scored around the top 15. I had planned to try other things, but I used only 1/3 of the allowed competition time -- and hence did not explore advanced feature engineering in the winning solutions. But interestingly, this solution was similar to winning solutions.

bettermarks

Bookmarking system for Bash and Zsh

ca1pfc_blender_models

3D brain models for pubs and presentations

commandline_tetris

Implemented Tetris at the command-line terminal (pure text characters, no GUI) in C++ for fun. About a week of code. Originally tested in PowerShell.

config

git control of my key configuration files (neovim, spacemacs, and tmux)

connect

(ryoung mod, GPU version) CoNNECT: Convolutional Neural Network for Estimating synaptic Connectivity from spike Trains. Endo et al., bioRxiv (2020).

data-pipeline

ryoung's current data processing pipeline in Jadhav Lab

deepinsight

(ryoung mods) A general framework for interpreting wide-band neural activity

di.jl

Julia based Data Interface for my electrophysiology and behavior data. All data types are Tidy Data based DataFrame objects (rows=samples, cols=properties of samples)

diutils

This package split from a much larger git repo that comprised my julia lab code environment. Contains my homebrew utilties used on DI.jl based neural data analysis. Short one-off functions I lean on to save time often go here.

dynamicaxiswarping.jl

Dynamic Time Warping (DTW) and related algorithms in Julia, at Julia speeds

environmentcontrolunit-goalfetchmaze

Code for our goal pursuit maze.

github2file

ry's fork of github2file :: modified for multi-file type and allowing local zip file input ... useful for passing githubrepo to gemini/claude/etc

glm-cfc

A GLM based approach to measure CFC

goalfetchtask-analysistools

List of scripts and functions used to pry future-past related codes in the HPC-PFC system

gridsearch

Turn any script into a grid search. (ryoung's library)

julia-party-parrot

julia party parrot animation for funsies

julia-repl-vim

Julia REPL plugin for vim/neovim

mlab-utils

(🌌🔍 Vastly simplifies working with filter-framework datafiles...📂💡) Collection of core tools I've built to deal with fillter framework and nd branched cell types in JLab.

mountainsort-2-phy

Converts moutainsorted clusters to phy for curation using SpikeInterface. Includes a plugin to add mountainsort cluster metrics to phy.

museeegheadset-scrubber

Scrubs data from Muse EEG headset into a Tidy Data format. https://www.wikiwand.com/en/Tidy_data

neural_realime-closedloop-phasedisruption

ryoung's closed loop module for real-time detection of theta (or beta) phase and triggering optogenetic disruption using the SpikeGadgets software environment (https://spikegadgets.com/)

neurometrics.jl

plots.jl

(ryoung mods) Powerful convenience for Julia visualizations and data analysis

ratinabox

(ryoung mods) A python package for modelling locomotion in complex environments and spatially/velocity selective cell activity.

reaction-time-from-eeg_museheadset

This library learns to estimate human reaction times from consumer EEG data.

replay_trajectory_classification

Identify whether replays are fragmented, continuous, or stationary.

resume-matcher

Resume Matcher is an open source, free tool to improve your resume. It works by using language models to compare and rank resumes with job descriptions.

rnn-attractornetwork-newsomeshadlintask

This library instantiates an liquid-state RNN to solve Newsome & Shadlin's task. It does so with an itinerating attractor network.

searchsortednearest.jl

ryoung's modifications