Comments (1)
The downloadKEGG function has been removed (commit 9251f59), as it wouldn't work with newer Matlab version anyway. Kegg rest api doesn't allow bulk download. If one downloads the KEGG data anyway, the existing functions can still be used to generate the required KEGG structures for Raven.
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Related Issues (20)
- bug: on Apple silicon CPU getDiamond fails HOT 4
- Failed to make blastp executable HOT 4
- fix: addRxns definition of `rev` field
- chore: update tINIT references HOT 3
- solveLP() does not work because of issue in code HOT 6
- RAVEN >= v2.7.7 getModelFromHomology generates invalid GPRs from Recon3D HOT 3
- Error: ftINIT - failed to find good enough solution within time frame HOT 14
- help: getKEGGModelForOrganism gives error when using dispEM HOT 1
- bug: RAVEN 2.8.2 checkInstallation on new install
- bug: model loaded from YAML has no c-field
- bug: soplex reported failure, even when functional
- SBO terms not exported properly to Excel format when they are within MIRIAM annotations HOT 5
- Can fast tINIT integrate data from bulk RNA-seq? HOT 8
- Unrecognized field name "compNames" with ravenCobraWrapper error
- bug: make binaries executable on Ubuntu
- bug: simplifyModel with irreversible backwards-only reactions
- Error in getModelFromHomology function HOT 3
- PredictLocalization issue
- Is ftINIT compatible with other solvers than Gurobi? HOT 2
- non-matching identifiers when running getModelFromHomology HOT 1
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