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awesome-multi-omics

List of software packages for multi-omics analysis

correlation_crcassigner

Predicting the five CRCAssigner subtypes by correlating the expression of each sample to the CRCAssigner PAM centroids

covid-engine

COVID-engine is a pipeline method for PBMC-based gene signatures for systems-level analysis

crcassigner

CRCAssigner colorectal cancer subtype analysis

explobatch

A package for discovering and correcting for batch effect using an approach in Nyamundanda et al (2017).

explobatch_serial

Explore batch effect (exploBATCH) is a package for discovering and correcting for batch effect using an approach in Nyamundanda et al (2017)

explobatchbreast

A package with breast cancer gene expression dataset used in Nyamundanda et al (2017) manuscript on batch detection and correction.

explobatchcolon

A package with colon cancer gene expression dataset used in Nyamundanda et al (2017) manuscript on batch detection and correction.

fmm

Fast matrix multiplication R package

intpredict

Pipeline for gene selection and class prediction to identify robust genes

intpredictv2_1.0

mixcr

MiXCR is a universal software for fast and accurate analysis of T- and B- cell receptor repertoire sequencing data.

pannetassigner

pannetv1

phenmap

polyclustr

polyClustR: A pipeline to reconcile clustering solutions

rnaseqanalysis

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