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ace

Accelerated Computational Engine (ACE) is a GPU-enabled framework to simplify creation of GPU-capable applications

awesome-feltus

A repository for how to be awesome in the Feltus lab

biodepvis

configs

Config files used to define parameters specific to compute environments at different Institutions

entapnf

Functional Annotation of Gene Lists

func-e

FUNC-E performs functional enrichment of gene lists. It follows a similar approach to that of DAVID

gem_smasher

A gene expression matrix exploration tool set.

gemmaker

A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction

gemprep

gene-oracle

Feature extraction algorithm for genomic data

granny

gsforge

A gene (feature) selection toolset for gene expression matrix (GEM) data.

gsforgedev

A placeholder repository for the dev version of the docs website.

irods-docker

Docker / Singularity image for using the iRODS client commands on HPC systems

kinc

Knowledge Independent Network Construction

kinc-nf

Nextflow pipeline for KINC

kinc-v1-singularity

Instructions for running KINC v1.0 using a Singularity Image

kinc.r

Supplemental R package for KINC

kube-runner

A tool for running bioinformatics workflows on a Kubernetes cluster

pynome

Genome collection script for the SciDAS project.

pynome-nf

Nextflow implementation of Pynome for retrieval and parallel indexing of public whole genomes.

transcript_corral