tallcuppajoe Goto Github PK

2014-tutorials

Archive of the 2014 tutorials

2016-tutorials

repo for 2016 EDAMAME tutorials

2018_asm_workshop

Case study tutorial on using R to analyze microbiome data prepared for the 2018 ASM General Meeting in Atlanta, GA.

ados

angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

asm2017ados

asm2018-poster

Microbial Community Structure and Biogeochemistry of Three Small Eutrophic Lakes - Poster Presented by Joe James at ASMicrobe2018

bioinformatics

random collection of scripts used to process sequences

conditionallyraretaxa

R scripts and tutorial datasets to detect conditionally rare taxa in time series of microbial communities

fastablast

Functions for coupling mothur fasta files with blast

gom_16s

useful files for analysis in mothur of 16S genes sequences using earth microbiome project primes on miseq

harwell

jax18s

jaxqpcr

jl-16s

jones_r_files

metals

micron-16s-mothur

micron-18s-mothur-rd

minimalr

mockrobiota

A public resource for microbiome bioinformatics benchmarking.

paper_leesorensen_inprep

Workflows and R scripts for Lee and Sorensen et al

singletons

Meeting ideas for helping people coming to a meeting alone

tallcuppajoe.github.io

thrash_script

wed

mesocosm nutrient exposure periphyton