tandermann Goto Github PK

academic-kickstart

Easily create a beautiful website using Academic and Hugo

academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

assembling-complete-mt-genome

This repository contains tools for an automated assembly of the complete mitochondrial DNA from Illumina NGS data

bayesian_course_2017

Contents and scripts of the ForBio course 'Bayes in Practice' taught by Daniele Silvestro

bayesian_stats_tutorials

bioconda-recipes

Conda recipes for the bioconda channel.

biodiversity_nn_exercise

Tutorial and data for applying Neural Networks in biodiversity research

biopy_exercise

exercises from the python data science course

biopycourse

Python short course for graduates in biology and biochemistry

conservation_prioritization

Data and analyses for the Antonelli Lab research challenge

correct_database_keys

This repo contains scripts, example files and a jupyter notebook, describing the workflow to clean a set of database keys, which suffer from misspellings and other inconsistencies, using a fuzzy matching algorithm and using a machin-learning approach (Scikit-Learn's) to cluster keys based on their similarity score.

email_signature

My email signature

iucn_extinction_simulator

A program for estimating extinction probability and date for a given set of species, based on IUCN threat assessments

iucnsim

iucnsim R-package

mammal_extinction_supporting_info

Files related to the manuscript "The past and future human impact on mammalian diversity"

nn_diversity_prediction

paleovegetation

Code and data related to the reconstruction of paleovegetation using BNNs

phyluce

software for UCE (and general) phylogenomics

pop_gen_workshop_2017

This is a collection of exercises, scripts and notes from the workshop on demographic inference, 2017, Tjärnö, Sweden (with Daniel Wegmann and Matteo Fumagalli))

processing-illumina-reads

pyrate

PyRate is a Python program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.

python_for_biologists

Here you can find all tutorials and materials for the GGBC python for biologists course

runforest

A command line interface program to apply the RandomForest machine learning model for feature selection and classification of unknown data points

small_phylogenetic_tools

This folder contains mini-scripts that are useful for editing and transforming of alignment- and sequence-files.

snp_extraction_from_alignments

This repository contains tools for the extraction of Single Nucleotide Polymorphisms (SNPs) from multiple sequence alignments.

spatial_r_course

Here you can find all tutorials and materials for the GGBC spatial R workshop

target_capture_course

This repo contains material and tutorials related to the Forbio and GGBC target capture course

tjarno

Demographic inferences from NGS data

topaza_uce

all files and commands related to the topaza UCE allele phasing project

tutorials

tutorials for species delimitation analyses