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argofloats

Tools for analyzing collections of oceanographic Argo floats

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

bioinformaticsalgorithmsbook

Repository for code of the book "Bioinformatics Algorithms" by Miguel Rocha and Pedro Ferreira. Editor: Elsevier

cdt

The Climate Data Toolbox for MATLAB

cnpglobal_paper_repo

Code and data for article: Tanioka et al. (2022), Global patterns and drivers of marine ecosystem C:N:P

dotfiles

My dotfiles, with simple install script.

ersem_agemodel

This is a modified ERSEM used to study age-specific grazing traits of zooplankton

gopopcorn_data_codes

mse

Microbial Simulation Environment - A toolbox for the simulation of genome-scale metabolic network reconstructions in the marine environment. A case study with the AMT-13 cruise transect is included

pangem

Pangenome-scale metabolic network reconstruction, analysis, and strain-model extraction

phyto1

Phytoplankton model 1

rsquared.glmm

R-squared for generalized linear mixed effects models

spoon-knife

This repo is for demonstration purposes only.

tanioka17_gbc_dataanalysis

Data analysis code used in section 2 of Tanioka and Matsumoto (2017), Global Biogeochemical Cycles

tmm

TMM package for offline ocean biogeochemical simulations

uvic2.9

This is the base code of the University of Victoria (UVic) Earth System Climate Model version 2.9 with the Model of Ocean Biogeochemistry and Isotopes (MOBI) version 2.0.