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cpgs-validation

This is an external validation project aiming at validating all CpGs significantly associated with prognosis and prognostic models based on CpGs reported in existing literature.

deepsurv_shap

This project first used Deepsurv to train a deep learning model based on epigenome-wide DNA methylaiton data, and then use SHAP to rank the importance of input features.

dna_methylation_panel_identification

This project tried different machine learning methods to identify DNA methylation markers capable of improving the prediction of prognosis among patients with colorectal cancer.

gene_methylation_validation_meta

An external validation and meta-analysis of gene methylation biomarkers in tumor tissue for colorectal cancer prognosis

hiv-prognostic-model-development-and-validation

R code to develop and validate prognostic model for people living with HIV

multimodal_deepsurv

nadcs_meta

A meta analysis estimating the incidence and mortality of non-AIDS-defining cancer in people living with HIV

tanweiy

Config files for my GitHub profile.