taoziyu97 Goto Github PK
Type: User
Company: Shanghaitech university
Location: shanghai
Type: User
Company: Shanghaitech university
Location: shanghai
short description of repository
Multilingual Blogging Theme for Hugo | Check the Wiki for Documentation
about insertion and deletion in cancer exon genome
Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
pancancer mutational signature association study program
Prostate Cancer Alteration Signature Analysis
《机器学习》(西瓜书)公式推导解析,在线阅读地址:https://datawhalechina.github.io/pumpkin-book
Collect and organize all my own R scripts in study process
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R
Helper package for Sigminer
GPU implementation of ARD NMF
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
SRA Tools
R data package for pre-compiled somatic mutations from TCGA cohorts (from Broad Firehose and TCGA MC3 Project)
TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade in Python.
Official repo for the #tidytuesday project
课题组每周研讨会
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