tarah28 Goto Github PK

introverse

Documentation for beginners entering R and the tidyverse

is_mapper

IS mapping software

islandpath

IslandPath standalone software

jvarkit

Java utilities for Bioinformatics

kallisto-nf

A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools

kmerid

kraken

Kraken taxonomic sequence classification system

latex-tutorial

linuxbrew

:penguin: A fork of Homebrew for Linux

lorcan

LOng Read Consensus ANalysis (LORCAN)

ls-bsr

Large scale Blast Score Ratio (BSR) analysis

lyve-set

LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations

madr_pipelines

Slides and materials for my talk to the Madison R Users Group

mare

Microbiota Analysis in R Easily

marvel

MARVEL: Metagenomic Analyses and Retrieval of Viral ELements

mashtree

Create a tree using Mash distances

metabolomics-in-r

Supporting material for "Processing and visualization of metabolomics data using R"

metacoder

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

metagenomics-index-correction

metagenomics-workshop

Metagenomics Workshop

metagenomics_crash_course

mga

Multi-genome alignment contaminant screen for high-throughput sequence data.

micall

Pipeline for processing FASTQ data from an Illumina MiSeq

microbecensus

MicrobeCensus estimates the average genome size of microbial communities from metagenomic data

microbedb

Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI

microbedb-1

MicrobeDB v2

microbemiseq

Set of useful functions and scripts for analyzing amplicon Miseq data.

microbial-informatics-2014

Microbial Whole Genome Sequence data analysis labs for 2014

microbiome_helper

An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools.

microbiomeanalystr

A companion R package for the MicrobiomeAnalyst web server