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Welcome to my GitHub profile 👏

I am Dr. Tim Daniel Rose. I work as a Biological Data Scientist (AI Health Innovation Postdoc Fellow) at EMBL.

In my current projects, I focus on Machine Learning and data analysis for integration of Imaging Mass Spectrometry from the METASPACE knowledge base. The results of this work will be available here soon.

📖 Tutorials

I started writing for Towards Data Science. You can find my articles here: https://medium.com/@tim_75419. The code for the articles is available in my repositories.

🎓 PhD work

Tools I developed during my PhD on integration and functional analysis of clinical lipidomics data can be found here: https://gitlab.lrz.de/lipitum-projects

Packages

Here you can find the packages I developed:

Web services

We also developed web services for these tools:

Tim Daniel Rose's Projects

deep_mzclustering icon deep_mzclustering

Deep clustering of Mass Spec imaging data. Pytroch implementation adapted to work with varying image sizes.

metaspace icon metaspace

Cloud engine and platform for metabolite annotation for imaging mass spectrometry

metaspace_analysis icon metaspace_analysis

Large-scale analysis of the METASPACE knowledge base | Publication: https://doi.org/10.1101/539478

mosbi icon mosbi

Multi-algorithm Ensemble Biclustering Method MoSBi | Publication: https://doi.org/10.1073/pnas.2118210119

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