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barnacleboy

merfish playground

bcfstats

biocommons.seqrepo

non-redundant, compressed, journalled, file-based storage for biological sequences

bioconda-recipes

Conda recipes for the bioconda channel.

biofast

Benchmarking programming languages/implementations for common tasks in Bioinformatics

cgranges

Implementation of bedcov using rust cgranges

cyrcular

A tool for calling circles from nanopore reads (enriched for circular DNA)

cyrcular-paper

cyrcular-simulation

cyrcular-validation

cyvcf2

cython + htslib == fast VCF and BCF processing

dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.

genecart

longestlyndonsubsequence

Computes the longest Lyndon subsequence of a given input

lyner

A chaining toolbox for working with dataframes

matplotlib-pyo3

rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

rust-bcf

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

rust-biomart

A simple rust client for biomart

rust-script-feedstock

A conda-smithy repository for rust-script.

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

spotify-save-discover-weekly

Save Spotify's "Weekly Discover" playlist automatically - Powered by Github Actions.

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

varlociraptor

Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.