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16s-rrna-amplicon

Analysis of (gut) microbiome in Qiime2 and R.

16s_microbiome_analysis

This repository provides scripts for the 16S microbiome analysis and metagenome prediction using linux and R-Studio

advacncedr

awesome-bash

A curated list of delightful Bash scripts and resources.

blackjack_card_game

It works on terminal made in Python 3

cancer-microbiome-intervention-tutorial

JupyterBook for QIIME 2 FAES January 2022 workshop

classworkmsc

docker

epicassworkshop

eskapeamrpseudomonas

file-downloads-automator

Sends downloaded files to user-defined folders automatically. Avoids cluttering your downloads folder.

hcgs_metabarcoding_tutorials

Workflow for qiime2 workshop

instructor-training

Instructor Training

introductions

An Introductory repo for maintainers, collaborators and the bioinformatics community at large

machinelearning4genomics

Machine Learning for Genomics Course.

microsporidiamb-mosquito-microbiome

myfirstfork

Fork this repository and make changes to the README

nextflow

python4bioinformaticsv2

Updated materials for MSc Bioinformatics for Pwani University

qiime2-microbiome-workshop

qiime2_illumina

A Meta-barcoding pipeline for analysing Illumina data in QIIME2 framework

r-ecology-lesson

Data Analysis and Visualization in R for Ecologists

r-novice-gapminder

R for Reproducible Scientific Analysis

rbiostat

rna-seq-mini-project

The project explores RNASeq analysis pipelines and their codes/scripts. Comparison report between the pipelines is provided at the end of analysis with preferred tools outline.

scripts

singularitywork

snakemake

snakemake_16s_rrna_pipeline

16s rRNA gene amplicons analysis written with Snakemake workflow manager and Quantitative Insights into Microbial Ecoloy QIIME2 version 2022.11

ssu-microbiome

Preprocessing and downstream analysis of 16S and ITS reads (Qiime2 and phyloseq, vegan, ampvis2 in R)