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GoogleCodeExporter avatar GoogleCodeExporter commented on July 27, 2024
I seem to be having a similar problem, uploaded a tab delimited text file (I 
hope this is the correct format as I couldn't find any hits for "ta separated 
file" in google), for staphylococcus gene expression data using gene symbols as 
the IDs. Loads in fine but no actual pathways are highlighted, even though I 
know there are plenty of KEGG pathways because of my DAVID analysis. Not sure 
if all the settings when loading in are correct as the tutorial has no 
information on what settings to use. Using Mac OSX 10.8

I would very much appreciate any answers from the tool designers, I expect I'm 
putting something in wrong but it's very hard to know without any clearer 
instructions.

Original comment by [email protected] on 21 Aug 2013 at 2:27

from cytokegg.

GoogleCodeExporter avatar GoogleCodeExporter commented on July 27, 2024
I have the same problem with E.coli dataset using UniProt Identifiers to search 
for pathways doesn´t show any results and only mapped 2 genes of 1900 
identifiers. Maybe only the listed Model Organisms are available which are 
visible in "Repositiory" and "Browse Pathway" Options?
If so, is there a way or work-around to get the Data for other organisms?
What is the default identifier to use?
Help would be appreciated  

Original comment by [email protected] on 24 Sep 2013 at 8:40

from cytokegg.

GoogleCodeExporter avatar GoogleCodeExporter commented on July 27, 2024
Hi, I have the same problem with a human data set as Jo.Mora. Did anyone of you 
find a solution? Thanks for any help! 

Original comment by [email protected] on 8 Oct 2013 at 10:48

from cytokegg.

GoogleCodeExporter avatar GoogleCodeExporter commented on July 27, 2024
CytoKegg does not support gene symbols yet so when the tool tries to map the 
gene ids, no hits are found. I will add an error message for such cases.

Currently, the mapping tool is based on the KEGG API 
(http://www.kegg.jp/kegg/rest/keggapi.html) which does not support gene symbols 
but ncbi-gi, ncbi-geneid and uniprot identifiers.

I would suggest you to map your gene list to one of the identifiers listed 
above.

Original comment by [email protected] on 20 Jan 2014 at 2:16

from cytokegg.

GoogleCodeExporter avatar GoogleCodeExporter commented on July 27, 2024
For me it doesn't even work with uniprot or KEGG identifiers. And I am using 
Mus musculus codes. I don't know what is happening...

Original comment by [email protected] on 17 Mar 2015 at 2:35

from cytokegg.

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