Name: Thomas Hackl
Type: User
Company: University of Groningen
Bio: Assistant Professor for Eco-Evolutionary Bioinformatics
Location: Groningen, Netherlands
Blog: https://research.rug.nl/en/organisations/hackl-lab-eco-evolutionary-bioinformatics
alitv
Visualize whole genome alignments as linear maps
aliview
Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:
biozsh
the z in bioinformatics
cats
R-dummy-project
cb-emales
Supplementary code and data for endogenous mavirus-like elements in Cafeteria burkhardae genomes
circlator
A tool to circularize genome assemblies
cr-genomes
Supplementary code and data for genomes of C.roenbergensis: E4-10P, BVI, Cflag and RCC970-E3
cross-species-scaffolding
Super-scaffolding of draft genome assemblies with in silico mate-pair libraries derived from (closely) related references
detecteve
Find endogenous viral elements in genomes
dropbox-dual-account-setup
Multiple dropbox accounts on linux
flye
Fast and accurate de novo assembler for single molecule sequencing reads
gallery
Gallery of ggplot2 extensions
gggenomes
A grammar of graphics for comparative genomics
ggworldmap
Visualize Global-Scale Quantitative Data on World Maps with Projection and Shifted Central Meridian
google-sync
Scripts for syncing local tsv files with google spreadsheets
gotoh
Short implementation (~500 lines) of the Gotoh algorithm, a.k.a. Needleman-Wunsch with affine gap penalties.
hmm-scripts
host-phage-trna-att-finder
Link phages and potential host by finding shared attachment sites for prophage integration
imp
jellyfish
A fast multi-threaded k-mer counter
kat
The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
kmer-scripts
scripts for working with kmers - plots, filter, ...
lecture-variant-calling
Variant-Calling-Example
longhurst-province-finder
Determines Longhurst Province for a given Lat/Long coordinate
markup
The code we use to render README.your_favorite_markup
mash
Fast genome and metagenome distance estimation using MinHash
mbc
long-read-metabarcoding for eukaryotes
mbc-prime
Find group-specific primer binding sites for amplicon metabarcoding
media-scripts
A few scripts for conversion of media files etc..
minidot
Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
