Comments (3)
cc'ing @WeilerP
from cellrank.
@xfchen0912, we will not expose the data via a corresponding function in cellrank
. As mentioned in the reproducibility README, you can simply download the corresponding files from FigShare here.
from cellrank.
I think the correct download link would be:
- Raw data: https://figshare.com/ndownloader/files/41674299
- Processed data: https://figshare.com/ndownloader/files/41674206
from cellrank.
Related Issues (20)
- Comparing conditions in cellrank HOT 2
- Proper use of the "Lineages" Parameter for Lineage Drivers HOT 10
- ImportError: cannot import name 'deprecated_arg_names' from 'scanpy._utils' since scanpy 1.10.0 release HOT 6
- Problem with plotting fate probabilities separately "'NoneType' object has no attribute '_get_renderer'" HOT 5
- Simple cellrank 2 installation and loading error; scvelo compatibility HOT 1
- 3D UMAP and RNA velocity matrices HOT 2
- OSError when downloading example data: Unable to synchronously open file HOT 1
- In cases the same cluster is estimated as initial and terminal states HOT 4
- The order of row names of adata.obsm['lineages_fwd'] HOT 1
- gene expression trends line plots grouped by sample conditions HOT 1
- ValueError: Transition matrix is not row stochastic, 8216 rows do not sum to 1. HOT 13
- Manually adding a macrostate? HOT 4
- A question about ‘g_fwd.compute_fate_probabilities(preconditioner='ilu', tol=1e-7, solver='direct')’ HOT 5
- heatmap plot: what are the column HOT 1
- plot_single_flow raw data interpretation
- Extract gene expression on pseudotime from cellrank.pl.gene_trends
- Question about Transition Matrix and Initial States HOT 1
- CellRank can't be used in Python versions >3.9 HOT 4
- unable to install cellrank HOT 1
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