Comments (1)
Hi @roskclm, I have no experience with running differential kinetics in scVelo. CellRan's VelocityKernel works directly with the velocity vectors though, rather than with the Velocity graph. Can you check this is not some problem with scVelo not re-writing the velocity vectors when you execute it twice? Maybe just check what happens when you run both alternatives in two separate notebooks? As long as the velocity vectors in adata change, this should change the output of the VelocityKernel as well.
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