Related Issues (20)
- Update to sphinx 5.x
- Create PR preview
- Switch size factor analysis to pyDESeq2 HOT 2
- reach OverflowError in 8. Feature selection
- Packages compatibility issue when creating an env using preprocessing.yml
- Wrong plot titles in scCODA part
- cellranger barcodes 3M file URL dead HOT 3
- Ambient RNA removal and doublet detection for Smart-seq2 dataset
- Problem about using decoupler in CCC calculation HOT 1
- Issue on page /preprocessing_visualization/quality_control.html
- TypeError: metaclass conflict: the metaclass of a derived class must be a (non-strict) subclass of the metaclasses of all its bases
- .dylib files not present in matrixStats (used by scry library)
- Comment for the future figure in the text of /introduction/scrna_seq.html HOT 1
- Issue on page /mechanisms/gene_regulatory_networks.html about env and versions of packages
- Update ATAC-seq section with: Benchmarking computational methods for single-cell chromatin data analysis HOT 1
- Better sorting of pathways in /conditions/gsea_pathway.html?
- Issue on page /chromatin_accessibility/quality_control.html
- Fix environment building CI
- How can one use an independent reference for training and mapping using scArches? Issue on page /cellular_structure/annotation.html
- SoupX: rowSums(data) : 'x' must be an array of at least two dimensions
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