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circularcontigwgs

Pipelines for identification circular contigs from WGS data

data_for_course

fork-cobra

A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.

gwdsr

Wrapper scripts for an integrative analysis workflow for genome-wide detection of selection and recombination

hpitranscriptome

An integrated computational pipeline to investigate associations between pathogen-host protein-protein interactions and functional changes underlying gene expression data in host cells

inferential-statistics

Shiny app to perform statistical inference on mean(s), proportion(s) and variance(s).

panphlan

PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples

perl-for-bioinformatics

r_for_bioinformatics

savcmngs

wiSDOM is a browser-based R Shiny interface for scientists without statistics and programming expertise to conduct analysis and visualization of metagenomic data developed by R Shiny graphical user interface (GUI).

snakemakeatacseq

A Snakemake base workflow to perform routine analysis modules of ATAC-Seq data