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aeppl

Tools for an Aesara-based PPL.

aesara

Aesara is a Python library that allows one to define, optimize, and efficiently evaluate mathematical expressions involving multi-dimensional arrays.

alphatims

An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

arviz

Exploratory analysis of Bayesian models with Python

biochemicalalgorithms.jl

The Biochemical Algorithms Library in Julia

cml_dvc_case

dvc

🦉Data Version Control | Git for Data & Models | ML Experiments Management

example_cml

ionmob

An open-source prediction framework for peptide ion collision cross section (CCS) values with python.

machine-learning-algorithm-implemention

Implement algorithms with basic functions

mcmc_runtime_comparison

Compares Stan, PyMC, and PyMC + JAX numpyro sampler on a model for tennis

proteolizard-algorithm

prototype machine-learning solutions for high-throughput MS with ease

proteolizard-data

a collection of tools and wrapper classes for timsTOF data access and processing

proteolizard-vis

a collection of python classes and widgets for display of all aquisitions generated by timsTOF

pymc

Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Aesara

pymc-examples

Examples of PyMC models, including a library of Jupyter notebooks.

pymc-experimental

pystoms

Analysis of precursor MS features using bayesian statistics.

pytestfordatascience_pydatala

Pytest for Data Science Beginners

rustims_tm

A lightning fast hackable API for timsTOF data written in RUST