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autort

AutoRT: Peptide retention time prediction using deep learning

autowrap-feedstock

A conda-smithy repository for autowrap.

awesome-learning-with-label-noise

A curated list of resources for Learning with Noisy Labels

bachelor-thesis

My bachelor thesis on "Semi-supervised learning for nucleic acid cross-linking mass spectrometry".

bioconda-recipes

Conda recipes for the bioconda channel.

cbc

This is a mirror of the subversion repository on COIN-OR

container-pwiz

The ProteoWizard Library and Tools are a set of modular and extensible open-source, cross-platform tools and software libraries that facilitate proteomics data analysis, developed by the Proteowizard Team at http://proteowizard.sourceforge.net/. This repository contains the Docker image to convert from many vendor raw data formats to mzML via Linux WINE.

containers

Bioinformatics containers

containers-rules-manuscript

Recommendations to contenarized your bioinformatics software

contrib

The OpenMS contrib libraries

cpp_code_snippets

Advanced C++ By Example course. Currently in developemnt.

ctdopts

Gives your command-line tools a CTD-compatible interface

de.openms.knime

Nodes etc. related to OpenMS

diann

DIA-NN - a fast and easy to use tool for processing data-independent acquisition (DIA) proteomics data

dinosaur

Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.

dividemix

Code for paper: DivideMix: Learning with Noisy Labels as Semi-supervised Learning

dlib

A toolkit for making real world machine learning and data analysis applications in C++

dlomix-resources

dockerfiles

This repository holds Dockerfiles for creating docker images for several OpenMS configurations based on different base images.

fido

Fido protein inference tool, adapted for cross-platform build

github-paper

Plos in Computational Biology paper related with github for researchers, code, source and document

googlesummerofcode2018

gsoc

OBF Google Summer of Code

isospec

Libraries for fine isotopic structure calculator.

iwc

Intergalactic Workflow Commission

lfqbench

massbankupdate

ml4protid

msgfplus

mztab

mzTab Reporting MS-based Proteomics and Metabolomics Results