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airflow

Apache Airflow - A platform to programmatically author, schedule, and monitor workflows

alphafold

Open source code for AlphaFold.

alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

awesome-livecoding

All things livecoding

clasp

CLASP - Contrastive Language-Aminoacid Sequence Pretraining

cracking-the-data-science-interview

A Collection of Cheatsheets, Books, Questions, and Portfolio For DS/ML Interview Prep

deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

deepspeed

DeepSpeed is a deep learning optimization library that makes distributed training easy, efficient, and effective.

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

geomstats

Computations and statistics on manifolds with geometric structures.

gnina

A deep learning framework for molecular docking

gvp

Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure

kivy_sandbox

dynamically reload code into a Kivy GUI

learn_cryoem_math

lnj

magnetic-trap-purification

Magnetic Trap Purification

minifold

MiniFold: Deep Learning for Protein Structure Prediction inspired by DeepMind AlphaFold algorithm

network-visualizer

Visualize your network connections!

openfold

Trainable PyTorch reproduction of AlphaFold 2

openprotein

A PyTorch framework for prediction of tertiary protein structure

protein_bert

proteinnet

Standardized data set for machine learning of protein structure

python

All Algorithms implemented in Python

pytorch-rgn

Recurrent Geometric Network in Pytorch

rosettafold

This package contains deep learning models and related scripts for RoseTTAFold

sidechainnet

An all-atom protein structure dataset for machine learning.

snake

tr-rosetta-pytorch

Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design

trrosetta

A package to predict protein inter-residue geometries from sequence data