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all-fit

All-FIT - Allele-Frequency-based Imputation of Tumor Purity

bicg-2016

Bioinformatics for Cancer Genomics (2016) - Copy Number and SNV Labs

bookdown-demo

A minimal book example using bookdown

cellrangerrkitextra

Additional functions to support the 10X Cell Ranger R Kit

cnvkitutils

R Package Containing Utility Functions for cnvkit

cofeaturer

Plot Cofeature Matrices

comet

CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer

conda_recipes

Conda recipes

deutils

R Functions for Working with Differential Expression

dotfiles

Repository to Store My Various .dotfiles.

dpclust

Dirichlet Process based methods for subclonal reconstruction of tumours

dpclust_smchet_docker

DPClust subclonal architecture calling Docker pipeline for SMC-het

fred2

Python-based framework for computational immunomics

get-rmd-tags

Python script to generate tags from a Rmarkdown file for the tagbar Vim plugin

github-markdown-toc

Easy TOC creation for GitHub README.md

hisat-genotype

hstr

bash and zsh shell history suggest box - easily view, navigate, search and manage your command history.

isovar

Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence

knitr

A general-purpose tool for dynamic report generation in R

lda-r-test

Repository to Test Latent Dirichlet Allocation

manta

A tool for prioritizing single nucleotide variants (SNVs) within transcription factor binding sites (TFBS).

manta-1

Structural variant and indel caller for mapped sequencing data

merge-excel-workbooks

Example of How to Merge Multiple Excel Workbooks into One Workbook

mgsautils

neovim-from-scratch

📚 A Neovim config designed from scratch to be understandable

nextflow-join-operator-bug

An test example demonstrating a bug (?) in the Nextflow join operator

ngscheckmate

Software program for checking sample matching for NGS data

nvchad

Blazing fast Neovim config providing solid defaults and a beautiful UI, enhancing your neovim experience.

nvim-basic-ide

🪨 This is my attempt at a basic stable starting point for a Neovim IDE.

oncosnputils

An R package for post-processing the results of OncoSNP