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Tom Iverson's Projects

cecret icon cecret

Nextflow workflow for our analysis of SARS-COV-2

docker-builds icon docker-builds

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics

general_lw_scripts icon general_lw_scripts

The scripts that UPHL uses to download things from basespace and run respective workflows

miniwdl icon miniwdl

Workflow Description Language developer tools & local runner

nf-core_modules icon nf-core_modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nf-flu icon nf-flu

Influenza genome analysis Nextflow workflow

seqkit icon seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

staphb_toolkit icon staphb_toolkit

Python Toolkit for using containerized programs in either Singularity or Docker

tbprofiler icon tbprofiler

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

test_datasets icon test_datasets

Test data to be used for automated testing with the nextflow pipelines

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