Todd Knutson's Projects
2019 Speaker Materials
Speaker materials for 2020 conference
A repository of AsciiDoc source files for testing AsciiDoc rendering on GitHub.
BBEdit coddles language module for R
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
Safely copy data from high performance storage (panfs) to object based storage (ceph)
The Leek group guide to data sharing
Coursera: Data Analysis & Statistical Inference. Project using survey data.
GenBank Metadata Extraction Tool
Molecular Diagnostics Lab (MDL) clinical validation R package
Bash scripts for reproducible software installation as modules
Coursera: Reproducible Research. Identify the most costly storms in USA.
Coursera: Reproducible Research. Discover patterns in daily activity.
Coursera: Exploratory Data Analysis. Basic plotting in R.
Coursera: Exploratory Data Analysis. Explore fine particulate matter pollution in US cities.
Coursera: Practical Machine Learning. Train learning algorithm to predict weightlifting form.
Read-only mirror of R source code from https://svn.r-project.org/R/, updated hourly. See the build instructions on the wiki page.
A collection of various software tips and tricks.
Common statistical tests are linear models (or: how to teach stats)
R package for RNAseq, scRNAseq, variant calling, and other bioinformatics methods used by Todd