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tomdoel avatar tomdoel commented on July 17, 2024

Hi. Thanks for reporting. Tutorial 3 is a bit out of date, so that command will no longer work.

The easiest thing to do is import the data using image_uids = ptk_main.ImportData(source_path);.
This will group your data into one or more contiguous volumes. This returns a cell array of UIDs, where each cell array element is a UID for that contiguous volume. Normally a single image series will return a single volume, so image_uids will contain just one UID.

To turn that volume into a Dataset object use
dataset = ptk_main.CreateDatasetFromUid(image_uids{1});

If image_uids contains more than one UID it means the data have grouped into more than one volume (e.g. you have imported multiple images, or there are scout or other images mixed in with the volume). In this case you can examine the different volumes returned by creating a Dataset object for each, such as dataset_2 = ptk_main.CreateDatasetFromUid(image_uids{2}); for the second one, and so on.

I think the rest of the tutorial should work.

from pulmonarytoolkit.

anitakh1 avatar anitakh1 commented on July 17, 2024

from pulmonarytoolkit.

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