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biodb-benchmark

Different benchmarks about biological data and databases

biomirror

Scripts for mirroring biological data

bookdown_test

A simple bookdown test

catalan-dict-tools

Tools for managing Catalan dictionaries

couchdb_query

Extension for performing CouchDB queries within a MediaWiki instance.

docker-couchdb-lucene

Docker for CouchDB Lucene

docker-debian-perl-mediawiki

Docker image for Perl MediaWiki client libraries

docker-debian-python-mediawiki

Docker image for python MediaWiki client libraries

docker-freeling

Docker for FreeLing 4.0

docker-nginx-php

Basic Docker configuration for a NGINX and PHP image

docker-nodejs-mediawiki-client

Docker instance with a NodeJS MediaWiki client

docker-nodejs-wikidata

Docker image with convenient NodeJS wikidata tools

docker-openldap

A docker image to run OpenLDAP

docker-r-diffexpr

Docker R image for differential expression analysis

docker-rpi-mariadb

RPi-compatible Docker image with MariaDB

docker-selfoss

Docker of selfoss RSS reader

docker-semanticmediawiki

Repository for playing with Docker and Semantic MediaWiki

docker-wikibase

Docker container for a MediaWiki Wikibase instance

elmseq

etherpad-lite-docker

Dockerized Etherpad Lite

express-webpack-config

fa-nf

Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow

fuzzypass

Reordering of biological sequence alignment results by using different metrics and fuzzy logics. Based on ByPass

gbrowseimage

A Mediawiki extension for displaying Gbrowse images.

ghpages

ghpages test

gogoapi

REST API for handling public and custom biological databases services

home-zotero

Simple web tool for listing and syncing articles against external storage

igv.js-flask

Example project for integrating igv.js and flask

jbrowse-rest-api-example-lumen-

Jbrowse rest api php version

mediawiki-biodb

Extension for mapping database tables or structures directly into wiki. Used in Biological Database projects.