Comments (5)
Fixed in version 1.0.0.
from vsearch.
Please reopen - in USEARCH, the output is like: ">seq_name;size=XX;" and in VSEARCH it is: ">seq_name;size=XX".
The final ";" is missing.
Thanks!
Personally I think it makes a lot more sense the way VSEARCH implements the function, but if you are aiming to achieve 100% compatibility this does matter.
from vsearch.
Okay, will make it identical to usearch in next version.
from vsearch.
The semicolon at the end has been added in version 1.0.1. Also, with usearch_global the size is only output to the dbmatched file when sizeout is specified.
from vsearch.
Wow! That was fast!
Thanks for fixing it.
Cheers!
from vsearch.
Related Issues (20)
- --makeudb_usearch truncates fasta headers HOT 3
- maxseqlength is not supported by uchime_denovo command HOT 6
- vsearch --usearch_global not showing "full alignment" instead only the segment pair HOT 3
- vsearch --top_hits_only --maxaccepts 1 returns sometimes 2 values HOT 6
- Issue related to usearch_global match HOT 4
- missing userfields options
- Consequences of using vsearch on NovaSeq data HOT 4
- Fix warnings reported by Lintian HOT 2
- Obtaining the expected error for each read HOT 4
- Question about the query file of -usearch_global command when creating OTU tables HOT 6
- Convert Qiime2 database (2 files) into fasta database (1 file) for taxonomic assignment in vsearch HOT 2
- --weak_id not working HOT 8
- Problem building HOT 1
- Can't run static binary HOT 3
- is there a major vote fraction parameter of a vsearch clustered consensus sequence? HOT 5
- usearch_global command eats my sample IDs HOT 3
- USEARCH wants to go open-source? HOT 2
- Adapt for RISC-V HOT 2
- centroid sequence length after clustering is different from input sequences' length which are all equal to 200n HOT 2
- unexpected behaviour - v 2.28 sintax chooses first sequence when not classifiable HOT 4
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from vsearch.