Comments (3)
Most options accepting range of values now test for the validity of the value entered by the user. I should create scripts testing that, with the objective to confirm correct behavior and to find options that are not sanitized yet.
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UPDATE At the end of summer 2017, we had more than 1,500 unit tests for vsearch. Sadly, those tests cover only a fraction of vsearch's functionalities. I will have to prioritize covering some important functions first, for example --fastq_mergepairs
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The test-suite is usable again for continuous integration. Coverage is low, but that's a start.
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Related Issues (20)
- from fasta files to an OTU table HOT 1
- --uchime_denovo takes abundance information into account HOT 1
- how to detect matches containing many ambiguous symbols? HOT 1
- more compile-time checks HOT 2
- Issue encountered when using vsearch --usearch_global to generate OTU frequency table HOT 3
- clean-up stale branches HOT 1
- --makeudb_usearch truncates fasta headers HOT 3
- maxseqlength is not supported by uchime_denovo command HOT 6
- vsearch --usearch_global not showing "full alignment" instead only the segment pair HOT 3
- vsearch --top_hits_only --maxaccepts 1 returns sometimes 2 values HOT 6
- Issue related to usearch_global match HOT 4
- missing userfields options
- Consequences of using vsearch on NovaSeq data HOT 4
- Fix warnings reported by Lintian HOT 2
- Obtaining the expected error for each read HOT 4
- Question about the query file of -usearch_global command when creating OTU tables HOT 6
- Convert Qiime2 database (2 files) into fasta database (1 file) for taxonomic assignment in vsearch HOT 2
- --weak_id not working HOT 8
- Problem building HOT 1
- Can't run static binary HOT 3
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