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code2020materials

coot

CO-Optimal Transport

decorated-merge-trees

Tools for generating and comparing Decorated Merge Trees, enriched persistence-based topological data descriptors.

diode

alpha shape generator using CGAL

districtingandtda

framed-curve-matching

Matlab routines to compute geodesics between open and closed framed space curves. Based on the paper https://arxiv.org/abs/1807.03477

fsu_machine_learning_seminar

Jupyter notebooks on clustering and classification for the FSU ML Seminar.

giotto-learn

A high performance topological machine learning toolbox in Python

gromov-wasserstein-statistics

Statistics on the space of asymmetric networks via Gromov-Wasserstein distance

gtda-challenge-2020

This is the repo for the Giotto-tda use-cases challenge 2020.

introductiontotopologicaldataanalysis

mathfordatascience-fa22

mathfordatascience-fall21

mathfordatascience-fall23

Math for Data Science, FSU, Fall 2023

mathfordatascience-sp22

minicircles

Simple program to clean and display DNA minicircle data

planar-elastic-metrics

Code for matching curves with Elastic Metrics

proteins

Plot protein backbones from pdb file

python-bootcamp-2019

Materials for the Erdos Institute's Code Programming Bootcamp, May 2019.

quantizedgromovwasserstein

Scalable framework for comparing metric measure spaces with up to 1M points.

spectral-gromov-wasserstein

Graph matching and clustering by comparing heat kernels via optimal transport.

tdacourse

tdaspring21

Software demonstrations for a course on Topological Data Analysis.

topologically-attributed-graphs

weighted-euler-curve-transform

Code to produce Weighted Euler Curve Transforms from segmented greyscale image data