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Name: Torsten Seemann
Type: User
Company: The University of Melbourne
Bio: Bioinformatics and genomics for public health and clinical microbiology
Twitter: torstenseemann
Location: Melbourne, AUSTRALIA
Name: Torsten Seemann
Type: User
Company: The University of Melbourne
Bio: Bioinformatics and genomics for public health and clinical microbiology
Twitter: torstenseemann
Location: Melbourne, AUSTRALIA
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
π’π― Generic typing tool from amplicons and/or in silico PCR
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
Distinguish Bacillus cereus and biovar anthracis (anthrax)
Convert various sequence formats to FASTA
(a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
Phylogenomic trees with maps for the web
ARTIC nanopore protocol for nCoV2019 novel coronavirus
ASMNGS18 - 2018 Conference Details
Simple script to clip, assemble, tile and annotate a bacterial genome from Illumina reads
atlas
πΆπ¦ Very small Kraken2 database for bundling with pipelines
:microscope: :leo: Bacterial ribosomal RNA predictor
π π« Trim, circularise and orient long read bacterial genome assemblies
Conda recipes for the bioconda channel.
Collection of bioinformatics utility scripts, mostly written in Bioperl
Useful post-processing scripts for BRATNextGen output data
cgMLST from FASTQ reads
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
A single molecule sequence assembler for genomes large and small.
Automatically exported from code.google.com/p/cdhit
Masks recombinant regions in an alignment based on ClonalFrameML output
π»βπ¨ Calculate distance matrix from ChewBBACA cgMLST allele call tables
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
Assign COGs to protein sequences
reference free variant assembly
Collapse sequence homopolymers to a single character
Assembly based core genome SNP alignments for bacteria
A declarative, efficient, and flexible JavaScript library for building user interfaces.
π Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. πππ
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google β€οΈ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.