Importing mutations from msprime about pyslim HOT 2 CLOSED

So, the main thing you'd need here is to be able to generate mutations at integer sites, which would happen on the msprime side.

This is done!!

from pyslim.

Thanks for the report.

annotate_defaults() does not convert the continuous-valued positions of mutations in .trees file into integer values, as is required by SLiM. (When the resulting SlimTreeSequence is loaded into SLiM, an error results.)

This is as it should be, because there's no good way to convert mutations at non-integer locations to integer locations, because in moving their positions you might move them to a different tree, where they don't make sense. So, the main thing you'd need here is to be able to generate mutations at integer sites, which would happen on the msprime side. (and is something we intend to do)

I'll leave this open as a placeholder, though.

from pyslim.