Comments (3)
This is because some internal APIs were moved to tskit with msprime 0.7.0. I'll open a PR to fix this in a minute.
I have the same error, so your installation is probably fine.
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So do I need to install msprime again?
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So do I need to install msprime again?
No, I think your installation is fine, it's just some of the test cases are a little out of date.
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Related Issues (20)
- recapitating merged trees HOT 9
- add VCF example to tutorial
- recapitate has surprisingly small diversity if WF simulation is started and saved in `late` HOT 7
- release tasks
- tsinfered tree sequences don't have 'type' key in top-level metdata but `set_tree_sequence_metadata` expects they do
- provide example of annotating existing mutations
- test on annotating tsinfer'ed tree sequence
- recapitation root time auto-adjust fails with root times > 1e5, resulting in an `msprime.InputError` HOT 2
- release tasks
- Annotating tree sequence with pre-existing (node) metadata can lead to erroneous metadata HOT 1
- AttributeError in jsonschema HOT 3
- edges are lost from tree sequence after SLiM step HOT 6
- Potential to use .frequencies() method in /tutorial.html
- update quickreference list at top of docs
- default sex ratio 0.0 HOT 1
- Discrepancies in diversity after recapitation and mutation overlay HOT 1
- Recapitation for complex demography with populations that died out HOT 11
- Strange warning in recapitation HOT 2
- Typo in `recapitate` function docstring HOT 1
- :meth: is not working in documentation HOT 1
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