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100-days-of-ml-code

100 Days of ML Coding

100-days-of-ml-code-1

100-Days-Of-ML-Code中文版

16s-pipeline

usearch based 16S community profiling pipeline for analysis of ribosomal amplicon sequencing & analysis

2017_2018-single-cell-rna-sequencing-workshop-ucd_ucb_ucsf

2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF

2020_wilk_covid

Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVID-19"

361division

361 Division - Scientific Training, Education and Learning

art-of-programming

awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

awesome-vdj

Tools and databases for analyzing HLA and VDJ genes.

beautiful-visualization-with-r

《R语言数据可视化之美》配套代码

bioinformatics

book-r3

R的极客理想-量化投资篇

bookdown

Authoring Books and Technical Documents with R Markdown

bookdown-crc

A minimal example of using bookdown to write a book for Chapman & Hall/CRC

bugbase

cell-name-and-marker-validator

Cell Name and Marker Validation Demo

cellcnn

Representation Learning for detection of phenotype-associated cell subsets

cellphonedb

cellsnp

Pile up bi-allelic SNPs from single-cell and bulk RNA-seq data

celltypemimb

celltypeprediction

R script for cell type prediction based on CellMarker database and hypergeometric test

codeblock

comppls

An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional data

conos

Clustering on Network of Samples

conquer_comparison

Code for evaluation of differential expression methods in single-cell RNA-seq data

copro-seq

Scripts and other inputs needed to perform a COPRO-Seq (COmmunity PROfiling by Sequencing) analysis.

covidregionaldata

Data extraction tools for the Covid-19 outbreak

crispranalyzer

CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens

crispresso

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data