uacic Goto Github PK
Name: UACIC
Type: User
Company: University of Arizona
Bio: Applied Concepts in Cyber-Infrastructure
Location: Tucson
Name: UACIC
Type: User
Company: University of Arizona
Bio: Applied Concepts in Cyber-Infrastructure
Location: Tucson
Fluorescence Imaging Pipeline for Terra-Ref PS2 Data
Set up a Nomad cluster on OpenStack using Terraform
Nomad job specifications for the pipeline components
Transformer template for plot level lidar data analysis. Please read HOW_TO.md to start
Transformer template for plot level RGB data analysis. Please read HOW_TO.md to start
A template for creating transformers for multiple environments
Uploads CSV files to a BETYdb instance (based upon TERRA REF computing-pipeline/extractors/betydb)
Transforms RGB bin files to geo-referenced tiff (based upon TERRA REF extractors-stereo-rgb/bin2tif)
Calculates canopy cover on soil masked images (based upon TERRA REF extractors-stereo-rgb/canopycover)
Cleans Gantry generated metadata (formerly extractors-metadata/cleaner in TERRA REF)
Moving to https:/github.com/uacic. Processes environmental logger stream data files into a netCDF (based upon TERRA REF extractors-environmental/envlog2netcdf)
Creates an RGB field mosaic with Gantry images (formerly TERRA REF extractors-stereo-rgb/fieldmosaic)
Converts the IR bin files to geo-referenced TIF (based upon TERRA REFextractors-multispectral/flir2tif)
Loads CSV files to GeoStreams database instance (base upon TERRA REF computing-pipeline/extractors/geostreams)
Transforms raw imagery from 2D raster to 3D compressed netCDF (based upon TERRA REF extractors-hyperspectral)
Loads irrigation data into GeoStreams database (TERRA REF) instance (based upon TERRA REF extractors-environmental/irrigation_datparser)
Calculates canopy height from las file (based upon TERRA REF extractors-3dscanner/las2height)
Calculates mean temperature on IR images (based upon TERRA REF extractors-multispectral/meantemp)
Clips files to plot boundaries (based upon TERRA REF computing-pipeline/extractors/plotclipper)
Merges files (assumed to be plot level) (based upon TERRA REF computing-pipeline/extractors/plotclipper)
Converts PLY point clouds to LAS (formerly extractors-3dscanner/ply2las in TERRAREF project)
Converts PSII sensor files to PNG (based upon TERRA REF extractors-multispectral/psii2png)
Creates a quality measure on RGB images (based upon TERRA REF quality-metrics/rgb_qc)
Masks soil from images (formerly extractor-stereo-rgb/rgbmask in TERRAREF project)
Loads weather data into GeoStreams database (TERRA REF) instance (based upon TERRA REF extractors-environmental/weather_datparser)
Implements Transformer class and provides docker images for University of Arizona transformers for Common Workflow Language environment
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