Comments (2)
I took a harder look at what is involved here. It is easier to repurpose EstimateScatter.sh
to be ComputeCorrections.sh
because only the Random estimation needs to be included (delayed sinogram as a parameter). Furthermore, seperating the computation of Attenuation Coefficent Factors
from the scatter estimation is hard due to the need to export the variables, which may include an attenuation map that may be flipped in z
.
I propose that
EstimateScatter
is renamed toComputeCorrections
and the randoms estimation is includedin the script (it can simply be called).- Detailed steps are provided regarding the estimation computation.
- An additional output argument is added for Multiplicative Factors filename.
from stir-gate-connection.
Closed via #71
from stir-gate-connection.
Related Issues (20)
- EstimateSTIRGATENorm mistakenly adds 1s to the normalisation sinogram
- RandomsEstimate problems
- ComputePoissonDataCorrections script requires flip in z of attenuation map from GATE HOT 2
- Computation of the multiplicative factors
- ComputePoissonDataCorrections will fail if not called from `VoxelisedSimulation` directory HOT 1
- Scripts are depenant on running from SGC VoxelisedSimulation directory HOT 5
- source this_SGC.sh from a different directory issue
- Example/Debugging unlisting scripts for demonstrating the exclusion of different types of events
- Limit unlisting to a particular number of events.
- Combining many ROOT files using `hadd` can exeed the (default) 100GB limit HOT 1
- Something wrong with the script ExampleSTIR-GATE.sh HOT 12
- Example GATE geometries may not be compatable with STIR 5.0.1 due to rotation/offset changes
- about norm factors of mMR HOT 2
- Example mMR geometry may be out of date?
- STIR ray tracing parameters restrict to cylindrical fov HOT 1
- Add a Citation.cff file
- the unit of reconstructed image HOT 3
- Mistakes in `ComputePoissonDataCorrections.sh` documentation HOT 1
- D690 Geometry Inconsistency HOT 1
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