ulises-rosas Goto Github PK

atram

bold-miner

:shipit: Wrapper for BOLD API (+ barcode auditing)

boldminer

Wrapper for BOLD API (+ barcode auditing)

code

workshop

codebase_sff

cs5033

cs5483

dissectingfactors

Dissecting Factors Underlying Phylogenetic Uncertainty Using Machine Learning Models

dna-barcodes-basicmetrics

Variability measures of DNA barcodes sequences (i.e. Intraspecific and Interespecific)

fasta-to-dictionary

Python-based utility which reads and furnishes a dictionary data type from a fasta file

fishlifeexoncapture

fishlifeqc

Quality control steps for phylogenomics analyses

fishlifetraits

fishscrapping

:tropical_fish: Set of functions to mine FishBase database by mainly using web scraping methods

genetic_collections

A Python library for connecting and comparing genetic records with specimen data.

getgene

Just another data retriever for NCBI

ggpy

GGI automatization

guessinggame

hmmerutils

parser for HMMER output

lampbar

line-collapsing

Utility which collapses lines of sequences from multifasta files

loglobus

Transfer directories between clusters

mcmc

mfeprimer-py3

python3 version of MFEprimer-2.0

mismatchesonreads

Assess the presence of adapters after demultiplexing

obc

:shell: Check lists comparisons between both OBIS and BOLD databases

obisdat

:globe_with_meridians: Wrapper for OBIS API

phg

phylokrr

Non-linear phylogenetic regression using regularized kernels

seq-check

Bash script for fast assessment of sequences embedded on reads (i.e. fastq files). A tab-separated table with percentages of presence is obtained