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30-days-of-python

Learn Python for the next 30 (or so) Days.

agat

Another Gtf/Gff Analysis Toolkit

appls

Applied Python Programming for Life Scientists

arriba

Fast and accurate gene fusion detection from RNA-Seq data

automate-cv-rmd

Automate your CV - easy as 1, 2, knit! A workshop to get from data to professional CV using R Markdown presented at R-Ladies Melbourne

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

bedqc

BED QC tool (in the making)

bioawk

bioinformatics

bioinfo-scripts

General purpose scripts

bioinfokit

Bioinformatics data analysis and visualization toolkit

bioinformatics

Tools for bioinformatics

brownbear-isoseq-act-hib

Code for Long-read isoform sequencing reveals tissue-specific isoform expression between active and hibernating brown bears (Ursus arctos)

cbs-mirseq

CBS-miRSeq: a robust comprehensive bioinformatics pipeline for microRNA expression profiling by next generation sequencing.

cdna_cupcake

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

civet

clinical_svs

Clinically reportable structural variant calls

cov2db

deeptools

Tools to process and analyze deep sequencing data.

dysgu

dysgu-SV is a collection of tools for calling structural variants using short or long reads

fasomerecords

Extracts FASTA records from multiFASTA file based on a list of FASTA headers

fixitfelix

fusviz

A web app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.

genelab_data_processing

genevar

genevar2

getsequenceinfo

A Perl script allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories

ggpubr

'ggplot2' Based Publication Ready Plots

ggtranscript

Visualizing transcript structure and annotation using ggplot2

hicexplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.