vagkaratzas Goto Github PK
Name: Evangelos Karatzas
Type: User
Company: EMBL-EBI
Bio: Bioinformatician | Software Engineer | Research Fellow
Location: Cambridge, UK
Name: Evangelos Karatzas
Type: User
Company: EMBL-EBI
Bio: Bioinformatician | Software Engineer | Research Fellow
Location: Cambridge, UK
Interactive 3D visualization of multilayered networks.
Cytoscape 3 sample code for App developers.
We create a graph using the free online databases DisGeNET and DGIdb. The user is able to execute the R code with one argument (disease name as found in the DisGeNET_xxxxxxxx.txt) in order to find out a sorted list of potential related drugs through the common disease-drug genes.
This R script receives drug smiles per lines as an input and prints/returns the drug violations per drug/rule in a 2D matrix.
Compressing protein structures effectively with torsion angles
This R script uses two files from a GEO dataset as inputs, the series matrix and the platform annotations files and returns a .csv file with the intitial series matrix columns as well as their respective gene symbols.
From gene expression microarray data to Limma and curation of resulting Gene Lists.
Repository to host tool-specific module files for the Nextflow DSL2 community!
PathWalks is a random walk based algorithm where a walker crosses a pathway-to-pathway network under the guidance of a disease-related map. The latter is a gene network that we construct by integrating multi-source information regarding a specific disease. The most frequent trajectories highlight communities of pathways that are expected to be strongly related to the disease under study.
Multi-thread PathWalks based on number of input cores and total steps per walker.
Parses MicroArray Platform into a matrix of two columns: ID - GeneSymbol
Protein 3D structure prediction pipeline
Starting from a specific disease, the user is allowed to command random walkers to explore a multi level network of their own input choosing and are returned an edgelist with the walked edges and their aggregate step count values.
Test data to be used for automated testing with the nf-core pipelines
VICTOR: A visual analytics web application for clustering comparison
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.