SiameseDataGenerator should be tolerant of poorly formatted input data about deepcell-tf HOT 2 CLOSED

I would like to close this issue as the SiameseDataGenerator already checks for:

• Parent cell is in the last frame
• All batches contain one cell
• Missing daughters information

I think that these validations are sufficient, even though they do not validate all of the daughter data. Because we do not do label validation for instance segmentation models, I do not see why we need to validate the lineage data here in the data generator.

I could see a use for this in deepcell-tracking though.

from deepcell-tf.

I'm going to close this issue as the SiameseDataGenerator does do some validation, but full .trk or lineage.json validation should live in deepcell-tracking. This is now being tracked in vanvalenlab/deepcell-tracking#51.

from deepcell-tf.