Comments (1)
The relationship matrix, e.g., Kinship in quantitative genetics studies, is pre-computed before running any model with lme4qtl
. The lme4qtl
package has no functions to estimate/derive relationship matrices, as that is problem-specific.
from lme4qtl.
Related Issues (20)
- "direct" test of SNP in relmatGlmer / relmatLmer HOT 2
- Remove effect of the modeled VCV (e.g., pedigree) from the expected values of y HOT 1
- How to do unstructured and how to do compound symmetry heterogeneous covariance models ?
- Warning for RE variable mismatch in formula and relmat HOT 1
- way to adjust for kinship only? HOT 3
- Details of the Eigenvalue decomposition operation HOT 1
- Multiple matrices as random effects HOT 2
- ICC or h2 for binary response. HOT 1
- Ideas to be update `lme4qtl` due to `rBind()` function HOT 1
- p values for betas HOT 3
- how to apply GRM matrix into longitudinal data? HOT 5
- Negative binomial models HOT 2
- Use matlm for interaction between dependent variable and SNP HOT 2
- PIRLS step-halvings failed to reduce deviance in pwrssUpdate with probit relmatGlmer HOT 4
- cannot coerce type 'closure' to vector of type 'character' HOT 2
- Error in is.nloptr(ret) : objective in x0 returns NA HOT 4
- Predicting new data/unobserved phenotypes HOT 1
- Checking for Multi-collinearity HOT 1
- speed up relmatLmer? HOT 1
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