Comments (5)
Dear @stevenweaver,
It should consume defaults for non-required keywords. Where do you see a different behavior?
Best,
Sergei
from datamonkey-js-server.
Dear @spond,
It's pervasive, but specifically, the lack of kill-zero-branch-lengths
for BUSTED, SLAC, and RELAX will result in a prompt on CentOS 7. On second look, the -i
argument is being used on Datamonkey with HyPhy (I don't know why). Not sure how that happened, but that could have been the issue. I'll remove and see if that resolves the issue.
Best,
Steven
from datamonkey-js-server.
Dear @stevenweaver,
The -i
argument will explicitly override the consumption of default values:) If you remove it, the desired behavior should result.
Best,
Sergei
from datamonkey-js-server.
Transferring the issue to datamonkey-js-server.
from datamonkey-js-server.
Issue has been resolved and released.
from datamonkey-js-server.
Related Issues (14)
- MEME queue HOT 4
- Create separate queue for aBSREL HOT 2
- Remove use of redis .end() without flush parameter HOT 1
- Datamonkey: Analysis log file for FUBAR(and others) model results is empty HOT 1
- Protect pub/sub channel from aggressive job behavior HOT 1
- Uncaught exception handling in jobqueue.js
- Make number of processors requested by qsub job configurable HOT 2
- If redis service is not running, exit with explicit error message HOT 3
- GARD currently not functional on datamonkey HOT 3
- FADE jobs not working HOT 2
- Pin node version in package.json
- Update mocha tests HOT 1
- Upgrade to HyPhy 2.5.5
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from datamonkey-js-server.