Folder naming / additional level about hiv-ngs HOT 2 CLOSED

Hi Antoine,

In general it is not possible to ensure that such a mapping is unique. For example the same patient could be a recipient for one pair, but a source for another pair. The Level attributes are meant to annotate something intrinsic to the run, and immutable. I would suggest that you implement the mapping of (patient ID - date) to pair S/R in post processing.

Sergei

from hiv-ngs.

thx Sergei
I am working on a subset of data provided by Ben's student through
octamonkey. I really like this pipeline.
Do you think it will be possible to include AM in addition to DRM (see
table S1 from Sara's paper enclosed)? and CI for DRM frequency?
Is it possible to obtain an UDS error estimate value?

I will be mostly in HC this week if you want to discuss this

Best
A

Dr Antoine Chaillon
Postdoctoral Researcher
Center For Aids Research (CFAR)
Division of Infectious Diseases,
UCSD & VA San Diego Healthcare System
Stein Clinical Research Building #325
University of California San Diego
9500 Gilman Drive
La Jolla CA, 92093-0679

On Mon, Dec 22, 2014 at 2:54 PM, Sergei Pond [email protected]
wrote:

Closed #3 #3.

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#3 (comment).

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