Color subtrees according to clusters about phylotree.js HOT 5 CLOSED

Dear @jpsglouzon,

Yes, it can be done, but because you only label the terminal branches, you need to decide how to propagate the colors up the tree. For example, how do you color this subtree, where one of the terminal branches has no assignment (or belongs to a different cluster)?

Sergei

from phylotree.js.

Dear @spond,
Regarding the example, i realize that i made a mistake in the provided annotation.csv. In fact CCCvd have to replaced by CCCVd. That's why it's not colored properly. Clusters are typically subtrees and it would be nice to color the corresponding subtrees:

Thanks,
JP

from phylotree.js.

Hi @jpsglouzon,

OK, in other words you want to color internal branches if and only if all of their descendants belong to a cluster, correct?

Sergei

from phylotree.js.

Dear @jpsglouzon,

I updated http://bl.ocks.org/spond/dbc459acfaa6f134c67d to color internal branches as well.

Sergei

from phylotree.js.

Great! Thank your very much Sergei.
JP

from phylotree.js.