Comments (2)
@mcshane @skoren @Arkarachai @godotgildor I am very sorry to disturb you ,i am very interesting your method,thank you for your help !
from vgp-assembly.
Hi @zhoudreames , we noticed the bionano coverage dropouts too. It seems like it is due to the lack of sequence motif bionano is using for labeling. Note the centromeric sequence has a very limited sequence pattern compared to the rest of the genome.
from vgp-assembly.
Related Issues (20)
- how to use DNAnexus Workflow to assembly genome HOT 4
- Sex chromosome assembly HOT 3
- Chromosome status estimation HOT 8
- error in Asset HOT 3
- 10X align HOT 3
- genomescope evaluation HOT 7
- mitoVGP crashes on start HOT 8
- QUESTION: Does mitoVGP need pacbio RAW data (BAM) files as input? HOT 3
- mitovgp trimmer failing HOT 2
- plant mitochondrial genomes? HOT 6
- Runtime? HOT 1
- Clarification in documentation: Polishing phased assemblies HOT 4
- mitoVGP crashes on start HOT 4
- Possible missed documentation -- haplotype merging step HOT 4
- Pipeline for Polishing Canu assembly with Illumina Reads HOT 1
- Problem install conda environment HOT 4
- BLAST options error: File .fasta does not exist HOT 11
- telomere prediction HOT 1
- Database used for running kraken2
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